You’ve been diagnosed with an autoimmune disease, now what?

Various autoimmune diseases, there are over 80 autimmune diseases

Eradicate your suffering. While you may be told an autoimmune disease cannot be cured, wouldn’t it be nice to stop your symptoms and get on with your life?

You can! Read this:

First off—vital data:

  1. The word “autoimmune” means our normally defensive immune system is attacking otherwise healthy body parts.
  2. An estimated 7 percent of the US population (24 million) has an autoimmune diagnosis such as rheumatoid arthritis (RA), multiple sclerosis (MS), systemic lupus erythematosus (SLE), Psoriasis, Grave’s disease, Hashimoto’s disease, Celiac and other inflammatory bowel diseases, Type 1 Diabetes, and more… at least 80 types of autoimmune patterns are currently recognized; nearly any body part can be involved.
  3. Far more women are affected than men.
  4. We don’t know entirely what causes the immune system to attack the body.
  5. It is generally agreed that autoimmune disease only happens in genetically predisposed individuals; although we haven’t yet mapped the genes for autoimmune disease. AND, autoimmune diseases involve gut inflammation with increased gut permeability (a.k.a. “leaky gut”) plus a trigger.
  6. Often, if the immune systems makes this error against one organ or system, that individual is likely to develop additional autoimmune diseases.
  7. Lessening sources of inflammation is key to both prevention and to lessoning autoimmune symptoms.

What does “genetically predisposed” mean?

These are not “genetic defects” per se. Just like gene variations give one person blue eyes and another brown, we have variations in how efficiently we use certain nutrients (especially B vitamins), how well we clean out toxicants, and how our immune system responds to threats (chemical or metal overload, infections, food sensitivities…). You are not your genes. What your parents and grandparent and theirs before them suffered from health-wise (if they did) is determined faar more by diet and lifestyle factors. What “runs in the family”? Diet and lifestyle choices.

Some of us, sadly, have the specific perfect storm that results in the body’s immune system attacking specific (usually healthy) body parts: Genetic predisposition (did any of your parents or grandparents have an autoimmune disease?), inflamed/leaky gut, and a trigger. While we cannot control the genes we inherit, we certainly can control and heal leaky gut and avoid triggers.

What’s happening?

Meet your immune system. First, your front-line defenses try to “kill” any “foreign invader” (irritating foods, toxic chemicals, metals, immune stress like parasites, bacteria, viruses, yeast overgrowth…). White blood cells of different types try to engulf or use chemical warfare to disintegrate these threats.

On your blood tests, you may see high white blood cell counts (total WBC >7.0), especially high neutrophils—a type of white blood cell. If so, the situation just started. If the problem is solved, you feel better, life continues. You could feel ill because your immune system is working to address the foreign invader.

However, if your neutrophils cannot keep up with the threat, they get destroyed faster than your body can make them. Your blood test will show low functional end or below normal range (<5.0) to indicate an inflammatory situation that has gone on for some time.

Note: These are functional lab results, not lab reference ranges. I’ll evaluate client labs as part of a new client exam or progress exam, or schedule a longer visit than the basic follow-up.

When your immune system cannot keep up (chronic inflammation) it sends in the “special forces”. If the first wave of immune response is unsuccessful, the “foreign invader” is winning the battle (e.g. still eating inflammatory foods or not eliminating chemicals well enough or still being exposed, or an infection is not fully handled—common with certain viruses like flu, COVID, HIV, Herpes, and bacteria especially your microbiome balance, and Lyme disease).

types of white cells and what they address

Your immune system uses different types of white cells for different “invaders”. For example, many white cells known as neutrophils, eosinophils, basophils, mast cells use “chemical warfare” and blast invaders in an attempt to destroy them (including the collateral damage of your healthy cells) others  (T-cells and B-cells) work together to make antibodies so your immune system can detect and address the current foreigner and recognize the same or similar invader in the future and (hopefully) eradicate the problem before you are unwell (immunity). This is especially true not just for infections, it also occurs with many foods.

Your immune system is also supposed to educate the “special forces team” to recognize healthy self from infected cells and/or the foreign invader running rampant around your body. However, traitorous lymphocytes (T-cells) make antibodies against self—your healthy organs and systems, particularly). While defective cells in your body normally get detected and eliminated, in genetically predisposed people, a triggering event or even a threat that continues too long results in making antibodies that can and do attack “self”.

Once these traitorous T-lymphocyte cells are activated, they divide and make many more of themselves. Your new surveillance team grows in number—great if their antibodies are against a virus; not so great if the antibodies are against your thyroid gland (Hashimoto’s thyroiditis); or your salivary, tear, and other mucous glands (SjÖgren’s syndrome), your digestive tract especially IBS and Crohns, rheumatoid arthritis the insulation around your nerves (multiple sclerosis, peripheral neuropathy)… all of them are the same mechanism.; now your body has an army that attacks itself.

If you or anyone in your family has a diagnosed autoimmune disease, please be careful!

Activation and replication of immune cells

Vaccines are known triggers of autoimmune disease in susceptible people (genetic predisposition and leaky gut) Vaccine adjuvants (additives aimed at making vaccines more as potent as the infectious virus, etc., itself) are among chemicals that trigger an autoimmune response. If you have a family history of any autoimmune disease, please, please, please limit your exposure to vaccinations. Numerous studies show that Hashimoto’s thyroiditis, Systemic Lupus, Lichen Planus, and especially Psoriasis and Atopic Dermatitis can be triggered by vaccines in genetically predisposed people.

While vaccines and medications are certainly suspect, even more suspect are “the foods you’ve been eating all your life.” Yes, this is counter-intuitive—why did my body become sensitive now? Your early immune system couldn’t keep up—after years of low-grade irritation, your body finally sent in the “special forces”. The truth is that the problem has been building like the pressure on a fault zone. There might have been small tremors and ignored symptoms; then one day… “crack” and the fault line moves dramatically.

Guilt by association

Let’s say the chronic situation isn’t an infection—although a chronic or substantial infection can certainly trigger an autoimmune situation in genetically predisposed individuals—but let’s say it is an additive to a medication (such as aluminum or egg protein), or your immune system dislikes a food you eat often (gliadin/gluten and related proteins in wheat, oats, rye, barley—or gluten; zein in corn, orzenin in rice, casein in dairy products, the high bacteria count in grain-fed meats, milk and cheese products, or hormones aimed at making animals grow faster, pesticides including GMO plants engineered to make their own pesticides or grow in RoundUp, etc.).

Your immune system ramps up. Your immune “Special Forces” make antibodies to whatever is associated with the offending chemical, food, or “bug”. Chemicals, even sugar, attached to a protein will trigger antibodies against the nearby protein—which in many cases is *you*.

Guilt by similarity

What do you eat more than three times a week? Overconsumed foods are likely triggers. That slice of bread—even made from heritage grains? Think twice! The cheese (even from raw milk) you ate on just a few occasions has become a daily thing…

The gliadin and/or gluten in wheat, oats, rye, and barley looks like a foreign invader. It also is similar to certain proteins found in your thyroid gland. Your very own immune system will begin to attack your thyroid gland. Usually this is diagnosed as Hashimoto’s disease.

If you are sensitive to gluten, these six foods will cross-react and also cause problems because of their similar protein structure:

  • Dairy products such as milk and cheese (Alpha-Casein, Beta-Casein, Casomorphin, Butyrophilin, sometimes cheap Whey protein due to contaminants)
  • All other grains from grass family plants like corn, millet, oats, rice
  • Yeast if those grains are used in leavened baking goods. now we have a sensitivity to the yeast used to make beer, wine, cheeses, other baked/leavened goods even with alternate flours…

The medical treatment plan:

Conventional doctors have probably told you that autoimmunity is “a condition you have to live with.” They often recommend non-steroidal anti-inflammatory drugs (NSAIDs) such as ibuprofen, prescribe immunosuppressants (often Rapamycin or corticosteroids to block the immune response), and/or prescribe a course of antibody treatment aimed at inhibiting that specific immune response.

Worse than that, they may recommend you surgically remove or “blow up” the attacked organ—for example, radioactive iodine to kill the thyroid gland when Grave’s disease causes it to become hyperactive.

The problem with this approach:

  1. Nothing is done to address why the body might be attacking itself; and
  2. These medications have substantial side effects; and
  3. These medications may trigger additional autoimmune conditions.

The nutritionist treatment pan

First, find and fix what’s really wrong. Underneath those debilitating flare-ups are stress on your immune system, immune imbalances, and not enough genuine building blocks. I use a combination of Nutrition Response Testing, basic fasting blood labs

Keep those T-lymphocyte cells from becoming activated. 

  • Skip any and all irritating, immune-stimulating foods (dairy, grains, and especially sugar). Understand your autoimmune triggers.
    • Anything you eat more than 3x/week is suspect.
    • Be willing to challenge your thinking about “foods you’ve eaten all your life” and/or “foods everyone else eats” (those “everyones” may have health situations they don’t discuss).
  • Give your body plenty of tools so that it can filter and eliminate toxic chemicals and metals; as much as possible, avoid exposures.
  • Give your body plenty of nutrients that balance and regulate your immune system:
    • Eat fish or take a quality fish-oil supplement from vendors that test for mercury and other contaminants.
    • Make sure your vitamin D status stays in the functional range of 55-110 ng/mL (112.5-150 nmol/L – watch the units used by your lab!) and ensure adequate vitamins A and K as deficiencies in A or K can create a false D toxicity.
    • Get the right probiotics—cultured food is perfect as it is “wild caught mixed strains”. Store-bought supplements are rarely what you need. There are some high quality supplement probiotics that we can test using Nutrition Response Testing to get the right probiotic for each individual.
    • Eat eggs from pastured birds only, enjoy avocados, nuts, and non-grain seeds.
  • Worried about budget? It costs less to prepare foods at home from raw ingredients. Not everything has to be organic. Meats, fish, and eggs should be extremely high quality meaning wild caught fish and game, grass fed animals, pasture raised hens, as their body fats accumulate hormones and toxic chemicals (as do ours). Grab organic fruits but save on vegetables by using the Environmental Working Group’s Clean 15 / Dirty dozen lists.
  • Time constraints? Make enough for lunch or to freeze for another day. Use those “rainy days” to prep and make ahead.

An example meal plan:

Beverages and “staples”

Marie’s rehydration recipe 😊

Freedom from Wheat and Corn Tortillas Easy Probiotic Salsa
Rehydration - electrolyte drink easy grain-free tortillas Home-made probiotic salsa
Most of make too many trips to the “B.R.” meaning we are drinking fluids but it is not getting into our cells. Balance is off. Try this beverage; you need electrolytes and perhaps other nutrients. Thyroid problems, arthritic joints, psoriasis, inflamed digestive tracts, lupus… most autoimmune diseases are worsened with grains from the grass family of plants (wheat, corn, rice, rye, barley, oats). There are options. This one is simple Highly recommend adding probiotic foods to your diet. Save money and get the exact flavor you want by making your own.

Breakfast ideas:

Chia seed berry porridge

Buckwheat (Better than oatmeal) breakfast

Scrambled eggs with veggies, probiotic salsa and wheat/corn-free tortillas
creamy chia porridge Creamy Buckwheat Hot Cereal with Peaches scrambled eggs with veggies

Lunch & Dinners (steam vegetables and or create side salads from tender lettuces to enjoy with any of these recipes)

Grilled Steak, Mint, Bok-choy, and Greens salad

Garbanzo and Chorizo Chicken Soup

Golden Squash Soup

flank steak, mint, bok-choy, and lettuce salad with tangy lime dressingwith a tangy lime dressing

Caribbean garbanzo, chorizo, and spinach soup in a chicken base

healthy squash and bone broth soupShown with Almond Bread
Peruvian Estofado de Pollo
(Chicken Pot Pie)
Spicy Sriracha meat balls

Authentic Carne Asada

This Peruvian twist on chicken pot pie is a family favorite Delicious meatballs made from ground beef in a spicy tomato sauce served in a skillet or old metal pan in a restaurant Carne asada can be adapted for any topping preference

The autoimmune series:

You’ve been diagnosed with an autoimmune disease, now what?

Autoimmune diets for Inflammatory Bowel Disease (IBD)

Is your low energy adrenal fatigue? Autoimmune? Or something else?

Rheumatoid Arthritis—or any autoimmune—Triggers and Remedies

As leaky gut is part of every autoimmune scenario, recommend these posts regarding rebalancing and healing your gut:

The 4 Rs of Gut Healing

Balance your gut; boost your immune system; keep your brain healthy—the connection

Hypersensitive to “everything”? Allergies? Or only a “cold”?

Call me 907-222-1824 for an appointment to understand your unique situation and design your best program

Eating clean is good for everyone—head over to www.OurNutritionKitchen.com where the team continuously crafts new ideas and swaps in nutrient dense ingredients.Marie Cecchini Sternquist, MS CHHC; functional nutritionist, Masters of Human Health, Masters of Nutrition Response Testing

 

 

 

 

Copyright © Marie Cecchini and Synergy Health and Nutrition LLC 2026. All Rights Reserved

 

References:

Bellocchi, C., Fernández-Ochoa, Á., Montanelli, G., Vigone, B., Santaniello, A., … Beretta, L. (2019). Identification of a Shared Microbiomic and Metabolomic Profile in Systemic Autoimmune DiseasesJournal of Clinical Medicine, 8(9):1291

Daley, C. A., Abbott, A., Doyle, P. S., Nader, G. A., & Larson, S. (2010). A review of fatty acid profiles and antioxidant content in grass-fed and grain-fed beefNutrition journal, 9, 10.

Fritscher-Ravens, A., Schuppan, D., Ellrichmann, M., Schoch, S., Röcken, C., Brasch, J., … Milla, P. J. (2014). Confocal Endomicroscopy Shows Food-Associated Changes in the Intestinal Mucosa of Patients With Irritable Bowel SyndromeGastroenterology, 147(5), 1012–1020.

Guimarães, L. E., Baker, B., Perricone, C., & Shoenfeld, Y. (2015). Vaccines, adjuvants and autoimmunityPharmacological Research, 100, 190–209.

Mariani S. M. (2004). Genes and autoimmune diseases – a complex inheritanceMedGenMed : Medscape general medicine6(4), 18.

Silverberg, J. I., Gelfand, J. M., Margolis, D. J., Boguniewicz, M., Fonacier, L., Grayson, M. H., … Chiesa Fuxench, Z. C. (2018). Association of atopic dermatitis with allergic, autoimmune, and cardiovascular comorbidities in US adultsAnnals of Allergy, Asthma & Immunology, 121(5), 604.

Watad, A., David, P., Brown, S., & Shoenfeld, Y. (2017). Autoimmune/Inflammatory Syndrome Induced by Adjuvants and Thyroid AutoimmunityFrontiers in endocrinology7, 150.

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